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    刘涛, 郭存, 邹宗庆, 金立权, 吴健, 文利超, 邓智超, 初雨蒙, 王凌涛, 李伟, 郭永峰. 烟草TPP基因家族鉴定及表达模式分析[J]. 中国烟草科学, 2022, 43(6): 1-8,16. DOI: 10.13496/j.issn.1007-5119.2022.06.001
    引用本文: 刘涛, 郭存, 邹宗庆, 金立权, 吴健, 文利超, 邓智超, 初雨蒙, 王凌涛, 李伟, 郭永峰. 烟草TPP基因家族鉴定及表达模式分析[J]. 中国烟草科学, 2022, 43(6): 1-8,16. DOI: 10.13496/j.issn.1007-5119.2022.06.001
    LIU Tao, GUO Cun, ZOU Zongqing, JIN Liquan, WU Jian, WEN Lichao, DENG Zhichao, CHU Yumeng, WANG Lingtao, LI Wei, GUO Yongfeng. Identification and Expression Pattern Analysis of the TPP Gene Family in Tobacco[J]. CHINESE TOBACCO SCIENCE, 2022, 43(6): 1-8,16. DOI: 10.13496/j.issn.1007-5119.2022.06.001
    Citation: LIU Tao, GUO Cun, ZOU Zongqing, JIN Liquan, WU Jian, WEN Lichao, DENG Zhichao, CHU Yumeng, WANG Lingtao, LI Wei, GUO Yongfeng. Identification and Expression Pattern Analysis of the TPP Gene Family in Tobacco[J]. CHINESE TOBACCO SCIENCE, 2022, 43(6): 1-8,16. DOI: 10.13496/j.issn.1007-5119.2022.06.001

    烟草TPP基因家族鉴定及表达模式分析

    Identification and Expression Pattern Analysis of the TPP Gene Family in Tobacco

    • 摘要: 海藻糖-6-磷酸磷酸酶(TPP)是植物海藻糖代谢过程的关键酶,在植物的生长发育及非生物胁迫响应过程中发挥着重要的作用。为挖掘参与烟草发育及抗逆胁迫的TPP基因家族成员,本研究通过生物信息学的方法,在普通烟草基因组中共鉴定出了15个TPP基因,其中7个TPP基因定位在染色体上。系统进化分析发现,新鉴定的烟草TPP成员可分为3个亚家族,分别为CLASS I、CLASS II和CLASS III。共线性分析表明,有5个烟草NtTPP基因分别与7个拟南芥AtTPP基因形成同源基因对。启动子分析发现,NtTPP成员的启动子上存在多种激素和非生物胁迫响应元件。表达模式分析发现,NtTPP基因表达具有一定的组织特异性,大部分NtTPP基因在根中的表达量最高,有12个NtTPP基因在干旱胁迫下表达量上调,13个NtTPP基因能够被盐胁迫显著诱导表达。这说明NtTPP基因家族成员在烟草非生物胁迫应答中发挥着重要作用。

       

      Abstract: Trehalose-6-phosphate phosphatase (TPP) is a key enzyme in trehalose metabolism and plays an important role in plant growth and abiotic stress response. In order to excavate members of the TPP gene family involved in tobacco development and stress response, we identified 15 NtTPP genes in the common tobacco genome through bioinformatic methods, with 7 of the NtTPP genes located on chromosomes. Phylogenetic analysis revealed that the newly identified tobacco TPP family members could be divided into three subfamilies:CLASS I, CLASS II and CLASS III. Syntenic analysis revealed that there were eight homologous gene pairs between Arabidopsis and tobacco. Sequence analysis showed that the promoters of NtTPP genes contained various hormone- and stress-related elements. Furthermore, the expression of NtTPP genes was studied in different tissues and most of the NtTPP genes were expressed at the highest level in roots. The expression pattern analysis showed that 12 NtTPP genes were up-regulated under drought stress, and 13 NtTPP genes could be induced by salt treatments. This indicates that the NtTPP gene family members play an important role in drought and salt stress responses of tobacco.

       

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